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The Future of
Molecular Dynamics
Data Science

A unified, FAIR-compliant repository for biosimulation data — empowering researchers across biochemistry, pharmacology, and personalized medicine.

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Partnering with America's leading research institutions

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Building the First Unified American MD Database

At MDDB America, we are harnessing decades of cutting-edge computational resources to build a unified database that compiles and organises all data generated by molecular dynamics simulations.

By making these data accessible to a wider scientific community, we hope to drive new research and discoveries in fields such as biochemistry, pharmacology, and personalized medicine.

Our project addresses this unmet need by creating the first unified database for MD simulations in America, providing a platform for scientists to share, access, and build upon each other's work.

Explore MDDB Florida Node →

A Single Database for
Molecular Dynamics Simulations

Building on FAIR data principles for all MD simulation data.

F

Findable

Persistent identifiers and rich metadata enable full discoverability of all simulation datasets.

A

Accessible

Data retrievable via standardized, open, universally implementable protocols and APIs.

I

Interoperable

Formal shared vocabularies supporting integration with the broader life sciences data ecosystem.

R

Reusable

Rich provenance and clear licensing enabling long-term reuse and reproducibility.

Your Gateway to Comprehensive MD Data

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About

We compile and organise all data generated by molecular dynamics simulations, making them accessible to drive new research.

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Goals

Establish a platform adhering to Findable, Accessible, Interoperable, and Reusable principles for molecular simulation data.

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Community

A collaborative effort to create, establish, and sustain a database that allows findability, accessibility, interoperability, and reusability.

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Recent from MDDB America

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MDDBa at ACS Spring 2026
Milestone Conference

MDDBa at ACS Spring 2026

Prof. Alberto Perez presented the vision behind MDDB America at ACS Spring 2026. The Florida Node is the first MDDB node in the America and approaching 1,000 projects.

March 23, 2026
MDDB America at UF AI Days
Conference

MDDB America at UF AI Days

Our inaugural conference brought together leading researchers from across the Americas.

February 20, 2026
FAIR Principles in Biomolecular Simulations
Publication

FAIR Principles in Biomolecular Simulations — Nature Methods

Our landmark article published in Nature Methods.

January 15, 2026

For the Community,
By the Community

We recognise the need for a collaborative effort to create, establish, and sustain a database that allows findability, accessibility, interoperability, and reusability of molecular dynamics simulation data.

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